rs52116433 SNP Detail

Summary

• ID
  rs52116433
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:34871477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACAGAAT ATCCCAAAGA
  CCAAGTATAA ATTCAGTATT TCTGGCCACT TGGGGTTAAT GACATATACA TACATATATA
  TGTGTTTGTA TATACATATA CGTATACATA TACATATACA TATACATATA CATATACATA
  TGTATACTTA CATACATGCA TATATATGAA TGGACCAGAC AGAGTAGGAT AAGATGTTGC
  K
  TAGCCCCATC CTGGCCCCTG TCCTCATTCC AATAAGGAAT GTGATCTCAT AAATAGATAC
  AGGCTCCCTA CTTGTCTGCT GTGTTCTAGC CACAGCCCAC AAACAACTAC CTATCTTCAT
  CCCATGGCCC AGGGATCCCA TCACCTGGAC GGCAGACCCC AGACCATAGA GTGTTTTGGT
  AGGAAAATTT TGGTCCAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss148859855	ENSMUSSNP5356495	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs52116433					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:34871477 () rs orientation: forward

Symbol	Name	Function Class
Gm47150	predicted gene, 47150	105 bp upstream
Rr275718	regulatory region 275718	324 bp proximal
Rr283182	regulatory region 283182	1727 bp distal