rs52116725 SNP Detail

Summary

• ID
  rs52116725
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150320296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG GTTTTGGGTT TGTTTGTTTG
  T
  TTTTTTTTGG ACAGGGTTTC TCCTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148050623	ENSMUSSNP6766031	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321428724	CHEV_4_149609948	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52116725					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150320296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	622 bp proximal
Eno1	enolase 1, alpha non-neuron	882 bp upstream
Rr377416	regulatory region 377416	231 bp upstream
Rr605238	regulatory region 605238	723 bp distal
Rr605239	regulatory region 605239	623 bp proximal
Tssr40390	transcription start site region 40390	846 bp upstream
Tssr40391	transcription start site region 40391	931 bp upstream
Tssr40392	transcription start site region 40392	950 bp upstream
Tssr40393	transcription start site region 40393	963 bp upstream
Tssr40394	transcription start site region 40394	977 bp upstream
Tssr40395	transcription start site region 40395	1363 bp upstream
Tssr40396	transcription start site region 40396	1372 bp upstream
Tssr40397	transcription start site region 40397	1464 bp upstream
Tssr40398	transcription start site region 40398	1855 bp upstream
Tssr40399	transcription start site region 40399	1884 bp upstream