rs52117171 SNP Detail

Summary

• ID
  rs52117171
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30730536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTCTGCA GTTAAGAGCA TGAACTAACT GCTCTTGCAG
  AGAACTCAGA TTCAGTTCCC AATACCTGTG TTGGGTGGTC CCATATCTCT CTCTCTCTCT
  C
  TCTCTCTCTA ATATATATAT ATATATATAT ATATATATAT TTTTTTTTTT TTTTTTTTGA
  GACAGATCTC TCACTGAGCC TGGCCTATTT TTCCCATAG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148696709	ENSMUSSNP4212104	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52117171					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30730536 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	1617 bp downstream
Rr644976	regulatory region 644976	173 bp distal
Rr644977	regulatory region 644977	677 bp proximal
Tssr65829	transcription start site region 65829	1742 bp upstream