rs52117791 SNP Detail

Summary

• ID
  rs52117791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47865393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTAAGT ATCTGCTAAA
  GGATATATGT ATACACACAC ACACACACAA TATGCATGCA CCACATACAC ATATCAACAC
  ATACATACAC ATATGCATAC ATACGCACGT ACATGGCATG CTTGCTCACA TGTATACATA
  ACATGCACTC ATACATATAT GCACGCATAC ATACATGCAC ACATACATAC ATACATACAT
  R
  CATGCATGCA TGCATGCATA CATACATATT AGGTTCTTTC CCTAAGAATT TGGTAGTAAC
  CTTACTTCTT GGTCTCCAAA TTTTGGGGGA AATTTTTTTG GTCTTTGAAA TGTAAATGTC
  TGGAACTAGT TATGGGGAGG GTGAATAATC TGGTCGCAGA AGGATCTCTG AGAGCTCTCG
  GTTGAGGGTA GCAGGCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss130668154	NCBIM37_NT_039649_chr17_47691417	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	G	A	G	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs52117791					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130668154	NCBIM37_NT_039649_chr17_47691417	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47865393 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
D17Mit65	DNA segment, Chr 17, Massachusetts Institute of Technology 65	1146 bp distal
Rr335188	regulatory region 335188	793 bp distal
Rr335189	regulatory region 335189	193 bp distal
Rr335190	regulatory region 335190	8 bp proximal
Rr335191	regulatory region 335191	608 bp proximal
Rr335192	regulatory region 335192	1408 bp proximal
Rr335193	regulatory region 335193	1808 bp proximal