rs52118208 SNP Detail

Summary

• ID
  rs52118208
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84822548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGAGTGAG GATGAGCTGC CACAAGACAT CTCGCTGGCG
  GCTGGCAGCG AGTCTCCCGC ACTAGGCCCT GAAGCTCTGG AGCCACCAGC GAAACTGGCG
  M
  GGACTGACAC TCGTGGCCTC TTTGTGCAGG CCCTGCCCTC CAGCTAAGCC TGCCACCTCC
  CTGCACCCCT CCACCTGCCC AGCCTGCTGC TGCCCCTCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60642572	NES16272398	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A		C	A	A	C		A
ss145371860	ENSMUSSNP2721767	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss322747561	CHEV_8_86619818	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52118208					SNP	A	A	A	A	A	A	A	A	C	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642572	NES16272398	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84822548 () rs orientation: forward

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	1153 bp downstream
Rfx1	regulatory factor X, 1 (influences HLA class II expression)	within coordinates