rs52118714 SNP Detail

Summary

• ID
  rs52118714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85422108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCCCAAC AACTGCCTGA CTTGTCACCC CTCTATTTTG
  AAGGGAGAAC TACTTGTTCA ACTGTTCCTG TCCCAAATGC CTGGCAGAGG CTGATGACCC
  Y
  AATGTGACCT CAGAAGAGGA GGAAGAGGAA GATGAGGAGG AAGGAGAGCC AGAAGATGCA
  GAGCTAGGGG ATGAGATGAC CGACGTGTGA TGTTATCTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906713	NES15956502	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52118714					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906713	NES15956502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85422108 () rs orientation: forward

Symbol	Name	Function Class
Pradc1	protease-associated domain containing 1	1684 bp downstream
Rr633219	regulatory region 633219	949 bp distal
Rr633220	regulatory region 633220	222 bp proximal
Rr633221	regulatory region 633221	1391 bp proximal
Smyd5	SET and MYND domain containing 5	within coordinates