rs52120554 SNP Detail

Summary

• ID
  rs52120554
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3896154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GACTTACCCG TTTATTGTGA CTTTCTCCCT ACTGGAAGCT
  TGTTTGGGGA TCCAGGCCAC AAACCTTGTC TCTAAAGTTT TTTTTTTTTT TTTTTTTTTT
  K
  TTTTTTTGTT TTTTTGTTTT TGTTTTTCGA GACAGGGTTT CTCTGTATAG CCCTGGCTGT
  CCTGGAACTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147723176	ENSMUSSNP345161	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52120554					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3896154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7905	CpG island 7905	192 bp distal
Rr370033	regulatory region 370033	378 bp downstream
Rr510763	regulatory region 510763	within coordinates
Rr510764	regulatory region 510764	218 bp distal
Rr510765	regulatory region 510765	1366 bp proximal
Trap1	TNF receptor-associated protein 1	463 bp upstream
Tssr139752	transcription start site region 139752	459 bp upstream