rs52120814 SNP Detail

Summary

• ID
  rs52120814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:39109312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAGAAT TACCCCTGGT
  GCTAAGTAAT TCTAACCACT CTGTGTGTAT GTGTTTGTTC TTGATCTGAA AGGCTCAAAT
  ATTCAGATTT AAACTCAGAT CCACGCCACT CCACACATTT GTCAGTCACT GTGCTTCATG
  GTTTCACCAT CTTACAAAAG AAAAGTGCTT TCTTCCATGA TTCAATTAGA CACTTTGGCA
  Y
  GCCCTAAAGT TAAAAAAATG TAGTTCATGT TTTGTATTTT GTATTTTGTA ATTGTATTGC
  ATTTGTTTCC CCAAACCACT GTCTCCCCTC TTTCTAAAAC TCATCTTAAC ACTGTGATGG
  GAGGTGAAAT CTCGTGATTG GCATCATTCA TTATTCATCT CAGCGTTTAT ATGGTGAATG
  AGCTAAGTTC ATAGGGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61141307	NES16648311	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs52120814					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61141307	NES16648311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:39109312 () rs orientation: forward

Symbol	Name	Function Class
Gm71877	predicted gene, 71877	within coordinates
Gm71888	predicted gene, 71888	within coordinates
Gm71905	predicted gene, 71905	1880 bp upstream
Rr610607	regulatory region 610607	1073 bp distal