rs52121172 SNP Detail

Summary

• ID
  rs52121172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24910784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC TCAAAAAACC AAAAGTAAGT
  R
  AATAAAGTTA TTGTCGGGTT TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145361405	ENSMUSSNP6061531	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325333047	CHEV_17_24828755	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52121172					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24910784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8738	CpG island 8738	1571 bp distal
Gfer	growth factor, augmenter of liver regeneration	1380 bp downstream
Rr339325	regulatory region 339325	783 bp distal
Syngr3	synaptogyrin 3	1861 bp upstream
Tssr146762	transcription start site region 146762	1923 bp upstream
Tssr146763	transcription start site region 146763	1850 bp upstream