rs52121340 SNP Detail

Summary

• ID
  rs52121340
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153725570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAGGAAGGTG CAGTTCACCA GGGTCTGATG TTCAGTCAGA
  CAAATCACAA AGTGGTCAGA GGAACAAACC AGGAACAGTC CTGAACTTCA CACAGAAAAA
  M
  AAAACAAAAC AAAACAAACA AAACAAAACA AAAAAACCAA CCCACCACCA CCAACAACAA
  AACAGCCTGG ATTCAGAATA AGCATCATAG AAGTCAAGGA C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145750752	ENSMUSSNP2232097	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52121340					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153725570 () rs orientation: forward

Symbol	Name	Function Class
Teddm2	transmembrane epididymal family member 2	within coordinates
Tssr14286	transcription start site region 14286	920 bp downstream
Tssr14287	transcription start site region 14287	1212 bp downstream
Tssr14288	transcription start site region 14288	1224 bp downstream
Tssr14289	transcription start site region 14289	1259 bp downstream
Tssr14290	transcription start site region 14290	1343 bp downstream
Tssr14291	transcription start site region 14291	1365 bp downstream