rs52121419 SNP Detail

Summary

• ID
  rs52121419
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19307747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTTGG AATCCCCGGC
  GCCCTCGGGA GGTGAGACAA GAGAATAGTC AAAGTTCAAG CGAGGCCTGA CAACCTGTGA
  AAAGGGGCAT GGGAGCGGGG CAGGGCGGAG TGGGGGAAGG AAAGAAGAAA GAGTAGTGGC
  TCACACCTGT AATCTCAGAT CTTGGCAGCC GGAGGCAGGA AGATCGGGAT CAATTAGAGA
  K
  AGAATAAGAG AGAGAAAGGG GTGGGGGACG AGGGAGGGAC GCAGAAGGAG GAGGAGGGGA
  AAAAAGAAGC AGAAAAAGCA TAAGAGGTTT CCTATTAGCC GCTTTGGAGG CACACCTGTA
  TTCCACCCCT CCCCGTCTCC GCCTCTAGGT ACCAGGAAAG GGGCTTACGG AATGCTGCCG
  CTGGGATGTA CCCAGCCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148479105	ENSMUSSNP3511766	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52121419					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19307747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	156 bp distal
Gemin7	gem nuclear organelle associated protein 7	479 bp upstream
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	865 bp distal
Rr643194	regulatory region 643194	within coordinates
Rr643195	regulatory region 643195	164 bp distal
Tssr70933	transcription start site region 70933	459 bp upstream
Tssr70934	transcription start site region 70934	445 bp upstream
Tssr70935	transcription start site region 70935	419 bp upstream
Tssr70936	transcription start site region 70936	within coordinates