rs52122599 SNP Detail

Summary

• ID
  rs52122599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:54749956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AACCCTGTCT CGAAAAAAAA AAAAAAAAAA AAAAAAGACA
  AACAAAAAAG AGACAGATAG GCAGGCAGGC AGAAGCACAC TAGCACACGC GCGCGCACAC
  R
  CACACGCGCG CGCACACACA CACACACACA CACACACACA CGAGACTAGG TGTCTAGATG
  TCCCTGCATC TTAGAAAGTG GAGAAGGGAG GATCACTTGA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132140120	ENSMUSSNP6821362	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52122599					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54749956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2891	CpG island 2891			1357 bp proximal
Gm31490	predicted gene, 31490			684 bp upstream
Gm57377	predicted gene, 57377			1657 bp upstream
Lyrm7	LYR motif containing 7			Intron
				Noncoding-Transcript-Variant
Rr386093	regulatory region 386093			within coordinates
Rr447402	regulatory region 447402			422 bp distal
Rr447403	regulatory region 447403			373 bp proximal
Rr447404	regulatory region 447404			1167 bp proximal
Rr447405	regulatory region 447405			1469 bp proximal
Rr447406	regulatory region 447406			1668 bp proximal
Rr447407	regulatory region 447407			1772 bp proximal
Rr447408	regulatory region 447408			1974 bp proximal
Tssr3501	transcription start site region 3501			1637 bp upstream
Tssr101539	transcription start site region 101539			1660 bp upstream
Tssr101540	transcription start site region 101540			1885 bp upstream
Tssr108005	transcription start site region 108005			1434 bp downstream