rs52123577 SNP Detail

Summary

• ID
  rs52123577
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:140805856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCAGGA GCAATATCTC
  TGTTCTTGAA ATTTCTGGAA GCTTATTTAT GAATACCTTA TTAAAATGAT AGCATGATTT
  CAGAGACATT TACCAATTAC TAGGCTATTT CTAGAAGTCT GTGTTTAAAA GAAAGGTAGA
  GCAACGCATA AAGGAAGGGA GGAAAGAGGG AAGGAGGGAG GAAGGAAAGA GGGGAAGAAG
  K
  TAAGAGGGAG GAAAGGGCTC TATCTTAGCT TGTGTAATCT CAGGGACAGC AGCCAACAGG
  GCCTCCATCA TTTGAATATT GTAGCAGCCA CAGGAGAAGG AAACATTAAA ACTGTGTTCA
  GTCTCATATC ATTATCTCTT TGGCCATAGC ACTTGTGTCT GATATTGCTT AATTTGAAGT
  AAGCAGTAGG TGAGTGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147692850	ENSMUSSNP3327219	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss320529120	CHEV_2_140789672	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52123577					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140805856 () rs orientation: forward

Symbol	Name	Function Class
Macrod2	mono-ADP ribosylhydrolase 2	within coordinates
Tssr20486	transcription start site region 20486	1991 bp upstream