rs52123678 SNP Detail

Summary

• ID
  rs52123678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTGTCTTG ATTCTTAGCA CCCACAGGGT AGATCACACG
  CCCCTTTAAC TCCAGTTCCT CTCTTTTGTC TATCGTGGAC TTTAGGAGCC CGTGTGCTGC
  R
  CTTACATACA TACAAGCAAA ATATTCATAC ACATAATTAA TATAAATAAT AAATAAAAAC
  TAAGAGATTC TGGCTGGCCT GAAGTTCTGG AGCACACAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148681220	ENSMUSSNP2155255	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322134957	CHEV_7_31299910	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52123678					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214316 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	231 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1489 bp downstream
Tssr2186	transcription start site region 2186	338 bp upstream
Tssr65778	transcription start site region 65778	254 bp upstream