rs52123865 SNP Detail

Summary

• ID
  rs52123865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8822159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCCTTT TATTTCTCAA
  AGTTAAAAGG CTCAAGACAT TTCATAATTA AGGGTGCCCT GTAGTGCTCA TTGTTTGATA
  CTGCCATGTA ATCTGTTAAC TTAGGAAAAC AATTTGTTTT TGGGCTGTTT TCTGTTTGAT
  TGTTTGCTTT TAAGTTTTTG GGTTTTTTTT TTTTTTTTAA AATGGGTAAT GGATAAAGCC
  Y
  GAGGCTAGGC AGATAGCAAC TTTCAGTACT ATTACATTAC TGATTCTCAT TTATTTTCAA
  ATGTTAGTAG CTATGCTGGA TGCTTGGCAT TATCCATTAT CATTAAGTAG GGGTGTGTGT
  GTGTGTGTGT GTATTCTCTT TTGATGATTT TTTTAGTAAG ACATAAATTA GATGATTTCT
  TTCTAAATGT TTTAAGAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145983617	ENSMUSSNP4885662	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs52123865					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8822159 () rs orientation: forward

Symbol	Name	Function Class
Chd7	chromodomain helicase DNA binding protein 7	within coordinates
Tssr1116	transcription start site region 1116	20 bp downstream
Tssr36434	transcription start site region 36434	379 bp downstream
Tssr36435	transcription start site region 36435	357 bp downstream
Tssr36436	transcription start site region 36436	623 bp upstream
Tssr36437	transcription start site region 36437	650 bp upstream
Tssr40890	transcription start site region 40890	468 bp downstream
Tssr40891	transcription start site region 40891	1082 bp downstream