rs52124808 SNP Detail

Summary

• ID
  rs52124808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4562371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACACTTAC ATATATATAT
  ATATATATAC ATACACACAT ATACACATAC ATAAACACAA AAATATATAC ATACACTTAC
  ATATATATAC ATACACACAT ATACACATAC AGAAACACAA AAATATATAC ATATATACAC
  CATACATACA TACACACACA AAAATATATA CATACATACA TATGTACGTA CACACACATT
  R
  GTTCTAAATT CTAGAGAACA CAGGGATACT CTGAATATCC ATCTACCAGG AGAAAGCTGG
  CAGTATCCTT GTTGTTCCAG TTGCTATAGC AAAGTATCAC ACTGGGTGGC TTTAAAACAA
  CAAAAACTTG GTTCTCACAG TTCTGGAGGC TGGGAAGTCC AAGATGCTGA GAGAATCCAT
  ACCCTCTCTC TCACAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss61339527	NES16950008	PERLEGEN	MM_PANEL2	f	SNP	G		A	A
ss323873981	CHEV_12_4519179	CHEVERUD	SCREENING_POP	f	SNP		G			G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs52124808					SNP	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339527	NES16950008	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4562371 () rs orientation: forward

Symbol	Name	Function Class
2900045O20Rik	RIKEN cDNA 2900045O20 gene	within coordinates
Rr265385	regulatory region 265385	1970 bp distal