rs52128223 SNP Detail

Summary

• ID
  rs52128223
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTCACC ACCACCAGAA
  ACACACTTGA TTTTACATAC TAAAGAGACA GTGAGAATTC CAGGAAGGTA ATTTGTACCT
  GACAATCAGC AGGACCAAGA GGACAGACAG CATGTTCAAA AATGGGGTTG AAAGCTTATG
  AAAACAAAAC AAAAAAAACA AAAACAAAAA ACAAAACAAA ACAAAAAACC TTGTTTTCTG
  G
  TCTGAGACAA AGAGTACTAC TGCCCACATA AATACTTCAC TTTTTAAACT TCAAGCAAAG
  GCAAACACAT ACCACAGTAT TTCTGTGAGC TTTACTAGTT TCTAAAACGG TCGTGTGCTG
  TAATATAGTG AGTCAGAAAG AGGAAGTTAA AAGGCTAAAA AAATTAAAAA AAAAAAAAAA
  AGGCGACTAC TTCTTCTTCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss148941531	ENSMUSSNP2709270	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss319691772	CHEV_1_37531545	CHEVERUD	SCREENING_POP	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs52128223					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513781 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	within coordinates
Rr409535	regulatory region 409535	997 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	755 bp downstream