rs52128274 SNP Detail

Summary

• ID
  rs52128274
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191312476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCATCTG CAGGCCTTGC
  AAGCACAAGG TACACATTTA TACATAGAAG CAAAATGTGT GGTGTGTGTG TGTGTGTTAT
  AGCAAATAAA TAAAGTCTCA AAATATTTAA AATTATAGCT CTTAACATCT ATATATAATG
  CAGACTAAGG GTTGAGGGTC ATCTTTTTTT TTTTTTTTTT TCGAGACAGG GTTTCTCTGT
  G
  TAGCCCTGGC TGTCCTGGAG CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC
  CCCTGCCTCT GCCTCCCGAG TGCTGGGATT AAAGGTGTGC GCCACCACAC CCGGCTGAGG
  GTCATCTTTT AGTTAGGTGT TTTTAGTCTT TCCAGAATCA ATGTTAAAAA TTTGATTTCC
  ACATTGAGCT TGGTCACTAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146508249	ENSMUSSNP6038864	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52128274					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191312476 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints7	integrator complex subunit 7			Intron
				Noncoding-Transcript-Variant
Rr426190	regulatory region 426190			458 bp distal