rs52128304 SNP Detail

Summary

• ID
  rs52128304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172038591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT GATGGCTCAC ACCTTTAATC
  Y
  CAGTACTCTG GAGACAGAGG TAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007454	PARCsnp_1.17805	PARC_SEQ	INBRED	f	SNP		C	T
ss120010363	PARCsnp_1.07449	PARC_SEQ	INBRED	f	SNP		C	T
ss146184015	ENSMUSSNP6745999	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320123253	CHEV_1_174141155	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs52128304					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172038591 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	679 bp downstream
Tssr15168	transcription start site region 15168	898 bp upstream
Tssr15169	transcription start site region 15169	820 bp upstream
Tssr15170	transcription start site region 15170	798 bp upstream
Tssr15171	transcription start site region 15171	780 bp upstream
Tssr15172	transcription start site region 15172	699 bp upstream
Tssr15173	transcription start site region 15173	605 bp upstream
Tssr15174	transcription start site region 15174	551 bp upstream
Tssr15175	transcription start site region 15175	959 bp downstream