rs52129402 SNP Detail

Summary

• ID
  rs52129402
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96093168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GAGGCCAGCC TGGTCTACAA AATGAGTTCC AGGACAGCCA
  GGGCTACACA GAGAAACCCT GTCTCGGAAA AACCAAAAAA AAAAAAAAAC AAAAAAAAAA
  C
  CAAAAAAAAA AACGCATGTG ATCATTTAGT TCAACTCAGT TTTCACTTCA AGCACCTCGT
  GCATGCCAGT TTCCACTGGA GGTGGAAGGC AGAAGAGACC T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss132675302	ENSMUSSNP711144	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52129402					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96093168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	916 bp proximal
Gm11538	predicted gene 11538	1112 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Rr386513	regulatory region 386513	1584 bp downstream
Rr455321	regulatory region 455321	863 bp distal
Rr455322	regulatory region 455322	124 bp distal
Rr455323	regulatory region 455323	31 bp proximal
Rr455324	regulatory region 455324	510 bp proximal
Rr455325	regulatory region 455325	1115 bp proximal
Tssr104437	transcription start site region 104437	1099 bp upstream