rs52130543 SNP Detail

Summary

• ID
  rs52130543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134096058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA CAAAACATAT TCTTTGAAAA
  Y
  TTCATTTTCT GTATTTTTAT TTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133771333	ENSMUSSNP4349137	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321976675	CHEV_6_134069113	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52130543					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134096058 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	355 bp proximal
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	389 bp proximal
Etv6	ets variant 6	within coordinates
Rr639573	regulatory region 639573	85 bp proximal
Rr639574	regulatory region 639574	1443 bp proximal