rs52131299 SNP Detail

Summary

• ID
  rs52131299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122643326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA GAAGAAGAAG AAGAAGACAA
  Y
  GACGACGATG ACGACGGCGT CATGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321668953	CHEV_5_122955272	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52131299					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122643326 () rs orientation: forward

Symbol	Name	Function Class
Gm22965	predicted gene, 22965	1526 bp upstream
Gm57291	predicted gene, 57291	1661 bp downstream
Rr378565	regulatory region 378565	1044 bp downstream
Rr399329	regulatory region 399329	1510 bp downstream