rs52131716 SNP Detail

Summary

• ID
  rs52131716
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87739245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTATGTAT TTTTCAATAT
  CCTGGAAAAC GAGGGGAATA CCCCTTGTAT GTCTTCTGTA CTCTATGACA TAAGACATGG
  CACAAGTGAG CTAGGGATGT AGTTCAATGG CCTCGAGTCC CAGCACAAGG GCAAAAAAGT
  AATGCCAGGC ATGGTGGCAC ACACTGTAAT TCCAACACAC ACACACACAA CCTCCCCCCC
  M
  CACACACACA CTTCCTTTAA CTTCATTATT GGTTGGTTAT TTGTACCTTA GTTATTAATT
  TATTTGGACT TCCAAACAAC TGGAAAAAAT ACATTAATAG AACTGTTATT TTACAGGGGC
  ACCTGGCTTA AAACACGGTA ATACTTAAGG CAAAAGGCCA GAGACTATTA AAAAGAATCA
  CTATCTCACT GGACATCTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146179866	ENSMUSSNP2461250	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52131716					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87739245 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	1595 bp downstream