rs52131774 SNP Detail

Summary

• ID
  rs52131774
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102827347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGT TGTTTTTGTT GTTGTTGTTG
  G
  TGGTGGTGGT GGTGGTGGTG GTGAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147128934	ENSMUSSNP5875882	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52131774					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102827347 () rs orientation: forward

Symbol	Name	Function Class
Gm74679	predicted gene, 74679	1582 bp upstream
Rr561777	regulatory region 561777	964 bp proximal
Rr561778	regulatory region 561778	1305 bp proximal
Rr561779	regulatory region 561779	1593 bp proximal
Rr561780	regulatory region 561780	1939 bp proximal
Tssr19143	transcription start site region 19143	1575 bp upstream
Tssr19144	transcription start site region 19144	1591 bp upstream