rs52132894 SNP Detail

Summary

• ID
  rs52132894
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31092247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACAAAT GTGGGGTGTG
  TCTCAGCTAG GGTTTCTATC GCTGCAACAA AACACCATGG GGAGGAAAGG GTTTGTTCAC
  CTTACGCCTC CACATTGGTG TTTATCATGG AAGGCAGTCA GGACCAGAAC TCAAACAGGG
  CAGGAACCTG AAGGCAGGAG CTGATGCAGA GGCGTTGGCG GGGTGCTGCT TACTGGCTTG
  S
  TCCTCGTGGC TTGCTCAGCC TTTTTTTTTT TTTTTTTTTT TTTTTTTATT GTAGAACCCA
  GGAATCCCAG CTCAAGGATG GCATGCTAGA CCTCCCCCCT TGATAACTAA TAGAGAAAAT
  TCTTACAGCT GAATCCCATG GAGGCATCTC CTCAGCTGAG GCTCCTTCCT CTCTGATGAC
  TCTAGCATGC ATCAAGTTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145451136	ENSMUSSNP2888432	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325357664	CHEV_17_31010218	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52132894					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31092247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8937	CpG island 8937	1220 bp proximal
Dnah8	dynein, axonemal, heavy chain 8	within coordinates
Gm9937	predicted gene 9937	588 bp downstream
Gm50252	predicted gene, 50252	within coordinates
Rr330582	regulatory region 330582	1847 bp distal
Rr330583	regulatory region 330583	954 bp proximal
Rr341199	regulatory region 341199	847 bp distal
Rr341200	regulatory region 341200	955 bp proximal
Tssr143628	transcription start site region 143628	1963 bp downstream
Tssr147267	transcription start site region 147267	1758 bp downstream