rs52133422 SNP Detail

Summary

• ID
  rs52133422
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGGAGTT AGGTACCTAA
  TATGGATGCT GGGAGTTAAA CTCGGGTCCT CTGGAAGAGC AGCAAGTGCT CTTAGCCACT
  GAGCCATTTC TGTAGGTCCT GGTATGTCTC TCTCTCCTCC TTCCTGGGCT CCATCCATAC
  TAGCCTTCTC CTTGCTAAGG ACTAAGCCAA ACTCTATCTT GGGACCTTTT ATTTTTATTT
  W
  TTATTATTTT TATATTTTTA TATATATATT TTTTTTTGCC CAGAAACCAT TCAGCTTTGG
  GTATAAATAC TTCTTCCCTT TTTTCTTCTT TTTTTCCTTT TTAAAAATAT TTGTTTGTTT
  AATGTATGTA AGTATACTGT TGCTATCTTC AGACACACCA GAAGAGGGCA TCCAATCCCA
  TTACAGATGG TTGTGAGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148469527	ENSMUSSNP4458889	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52133422					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1233 bp distal
Cpgi18450	CpG island 18450	1867 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1994 bp upstream
Gm71808	predicted gene, 71808	1672 bp downstream
Rr155270	regulatory region 155270	952 bp distal
Rr155271	regulatory region 155271	49 bp proximal
Rr167137	regulatory region 167137	1151 bp distal
Rr167138	regulatory region 167138	1048 bp proximal
Tssr64790	transcription start site region 64790	1989 bp upstream