rs52133471 SNP Detail

Summary

• ID
  rs52133471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154277560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATACAGATGT ATTGAAACTG TAATTTCTCT AGAAGTGCAT
  GAGTGCATTT GCATGCACGC ACACACACAC ACACACACAC ACACACACAC ACGCGCGCGC
  R
  CACACATACA TACACAGGCA TGCACACATA CACATACATA AGCATTAACA CACAGATTCA
  TCTTTGAAAT TGCACAAATA GGATTACAAA TTTTTACTTA C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136116991	ENSMUSSNP7168482	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52133471					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154277560 () rs orientation: forward

Symbol	Name	Function Class
Rr587866	regulatory region 587866	1436 bp distal
Rr587867	regulatory region 587867	408 bp distal
Rr587868	regulatory region 587868	343 bp proximal
Rr587869	regulatory region 587869	584 bp proximal
Rr587870	regulatory region 587870	752 bp proximal