rs52133576 SNP Detail

Summary

• ID
  rs52133576
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121949242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTTGTGC TGCTCGGTTA ACAGGCATCT GGTAGTGCGC
  TTTTCTTGGT AGCAAGTACT CTTTTAAAGT CTAGAACTAA TAAAGAACCC TCTACCATTT
  W
  AAAAAAAAAA AAAAAAAGCA GGGCTTCACA ACAGACCCCC TCCCCCCATC CCCGGCTTCG
  AGAAATCGGC CCCTCTACGG AGTGGTATGG AGTTTTGGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147409355	ENSMUSSNP2003977	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320487093	CHEV_2_121944497	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52133576					SNP	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121949242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	165 bp distal
Gm75635	predicted gene, 75635	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	1347 bp downstream
Rr55508	regulatory region 55508	within coordinates
Rr373779	regulatory region 373779	within coordinates
Spg11	SPG11, spatacsin vesicle trafficking associated	375 bp upstream
Tssr19802	transcription start site region 19802	1826 bp downstream
Tssr19803	transcription start site region 19803	207 bp downstream
Tssr25950	transcription start site region 25950	412 bp upstream
Tssr25951	transcription start site region 25951	364 bp upstream