rs52133882 SNP Detail

Summary

• ID
  rs52133882
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76369012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CACAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGACC CCACAACACA CACAAAACAC AGCGCGTGCG CGCGCACACA AGCACGAGGG
  G
  GGGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GTAGAGAAGA GGAGGGGAGG
  GGGCGGGGTG ACGTCACTCC CCAATATCCA TCCACCCAGC C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146590134	ENSMUSSNP3846479	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52133882					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76369012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	2 bp distal
Gm42303	predicted gene, 42303	117 bp upstream
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr101140	regulatory region 101140	within coordinates
Rr101141	regulatory region 101141	988 bp proximal
Tssr37647	transcription start site region 37647	109 bp upstream
Tssr37648	transcription start site region 37648	678 bp upstream
Tssr42162	transcription start site region 42162	990 bp upstream
Tssr42163	transcription start site region 42163	279 bp upstream
Tssr42164	transcription start site region 42164	160 bp upstream