rs52133980 SNP Detail

Summary

• ID
  rs52133980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90809820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTA TTTGAGGAGA AGGGAGGGGA
  R
  CAGGGACTTG GAGAAGGGGT AGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144934144	ENSMUSSNP2178731	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss319838253	CHEV_1_92778675	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52133980					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90809820 () rs orientation: forward

Symbol	Name	Function Class
Gm70606	predicted gene, 70606	within coordinates
Gm70611	predicted gene, 70611	924 bp downstream
Rr371697	regulatory region 371697	within coordinates