rs52135130 SNP Detail

Summary

• ID
  rs52135130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAACTCAA AACAAAACAA ATAACAACAA AACCAATAAA
  AATTGTAAGC CTCAGCGTAA CAGACACAAA CAACTGGACT GAAAGGAGAA GCGCTAAAGT
  Y
  GGTTACCCAG CATTAGCTCT CGAGAAACAT CAACCATTTT CTTACCTATG GTTACATCTC
  CTCTGATTTC GCTTTCTACA CACACTACTG CTCCGGGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60592257	NES16320179	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	T	C	T	T		T	C	T	T		C
ss149092854	ENSMUSSNP5508166	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322575032	CHEV_8_35169350	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52135130					SNP	C	C	C	C	C	T	C	T	C	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592257	NES16320179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1819 bp proximal
Dctn6	dynactin 6	within coordinates
Rr661952	regulatory region 661952	607 bp proximal
Rr661953	regulatory region 661953	1039 bp proximal
Rr661954	regulatory region 661954	1546 bp proximal
Rr661955	regulatory region 661955	1555 bp proximal
Tssr80889	transcription start site region 80889	1466 bp downstream
Tssr80890	transcription start site region 80890	1520 bp downstream