rs52135391 SNP Detail

Summary

• ID
  rs52135391
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54570436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAATATATAT AATATTATAT ACATATATGT ATATATATAA
  ATATGTATAT GTGTATGTGT ATATATATAT ATATATATAT GTGTGTGTGT GTGTGTGTGT
  S
  TGTGTGTCTG TGTGTCTGTG TGTCTGTGTG TCTGTGTGTG TATCCTGACA TCTGCCAGAG
  GAGGGAGATG GAAAGTCAAG TGTAAGTTAA GTATGAGGGT C                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136506941	ENSMUSSNP7028222	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52135391					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54570436 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	1282 bp upstream
Gm39341	predicted gene, 39341	1196 bp downstream
Tssr89653	transcription start site region 89653	1436 bp upstream
Tssr89654	transcription start site region 89654	1297 bp upstream
Tssr89655	transcription start site region 89655	1240 bp upstream