rs52135797 SNP Detail

Summary

• ID
  rs52135797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69936361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGATGATT AAACCACCCA
  TTGGTGTTCT GCCCCTTTCA GTGGACATGT AGGTTTTTTG TTTTTTTTTT TATTGTGACT
  TATTTACTTT ACATCTCAAT TGCAGCTTTC CCTCCCTCTT CTCTTTCAAG TCCTTCCTTT
  TCTTTCCCCT CTCCCACCAC TTGCCCTCCC TCCACTCCTT TTTAGAAAAG GGGAGGCCTT
  Y
  CATGGATATC AACCAGTCCT GGCATCACCA AATTGAGGTG AGACTGGGCT AGGCAAGGCA
  GCCCAGCTAG GGAAAGGGCT CCAAAGGCAG ACACAGACGC TGCTCCTGCT GTTAGGCGTC
  CCATGTGAAG ACCAAGGTGC ACAACTGTTA CATGAGTACA GAGTGCCTAC CTTCTTCCCA
  TGCGTGCTCC TTGGTTGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144577401	ENSMUSSNP1632609	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss324407072	CHEV_13_69927120	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52135797					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69936361 () rs orientation: forward

Symbol	Name	Function Class
Gm60947	predicted gene, 60947	within coordinates
Rr273521	regulatory region 273521	1640 bp proximal