rs52136373 SNP Detail

Summary

• ID
  rs52136373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86576863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAG GAAATCAGAT ATGCACACAC
  R
  TGCATGCACA TATGTGCGTA CGTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136760224	ENSMUSSNP6143501	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52136373					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86576863 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	650 bp upstream
Cpgi22104	CpG island 22104	403 bp proximal
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	within coordinates
Rr197818	regulatory region 197818	1663 bp distal
Rr206830	regulatory region 206830	within coordinates
Tssr90786	transcription start site region 90786	830 bp downstream
Tssr90787	transcription start site region 90787	860 bp downstream
Tssr90788	transcription start site region 90788	961 bp downstream
Tssr90789	transcription start site region 90789	1028 bp downstream
Tssr90790	transcription start site region 90790	1087 bp downstream