rs52136569 SNP Detail

Summary

• ID
  rs52136569
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA GAATGGAACA CATGCTGTAG
  W
  GAACACAAGA CATCAGAAAG AGGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701918	CHEV_5_137624612	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52136569					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177589 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	518 bp downstream
Tssr1678	transcription start site region 1678	1743 bp downstream
Tssr49309	transcription start site region 49309	1037 bp upstream
Tssr49310	transcription start site region 49310	1397 bp upstream
Tssr49311	transcription start site region 49311	1411 bp upstream
Tssr49312	transcription start site region 49312	1791 bp upstream
Tssr53918	transcription start site region 53918	1975 bp upstream
Tssr53919	transcription start site region 53919	897 bp downstream
Tssr53920	transcription start site region 53920	913 bp downstream
Tssr53921	transcription start site region 53921	1068 bp downstream
Tssr53922	transcription start site region 53922	1109 bp downstream
Tssr53923	transcription start site region 53923	1150 bp downstream
Tssr53924	transcription start site region 53924	1164 bp downstream
Tssr53925	transcription start site region 53925	1202 bp downstream
Tssr53926	transcription start site region 53926	1233 bp downstream
Tssr53927	transcription start site region 53927	1382 bp downstream
Tssr53928	transcription start site region 53928	1400 bp downstream
Tssr53929	transcription start site region 53929	1437 bp downstream
Tssr53930	transcription start site region 53930	1502 bp downstream
Tssr53931	transcription start site region 53931	1527 bp downstream
Tssr53932	transcription start site region 53932	1543 bp downstream
Tssr53933	transcription start site region 53933	1581 bp downstream
Tssr53934	transcription start site region 53934	1613 bp downstream
Tssr53935	transcription start site region 53935	1664 bp downstream
Tssr53936	transcription start site region 53936	1685 bp downstream
Tssr53937	transcription start site region 53937	1775 bp downstream
Tssr53938	transcription start site region 53938	1811 bp downstream
Tssr53939	transcription start site region 53939	1865 bp downstream