rs52137056 SNP Detail

Summary

• ID
  rs52137056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24099285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGAGGACCTT CCCCGCCCAC GCTGCACTCC CGTCACTCAG AGCGCGCGCT
  R
  CGACCCAGGA ACTAATCAGC AGCTGCCCTA GGTAAGGGGA AGGGGGGACG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60983363	NES16154574	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs52137056					SNP	A	G	G	A	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60983363	NES16154574	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24099285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	within coordinates
Gm74022	predicted gene, 74022	within coordinates
Rr643436	regulatory region 643436	1611 bp distal
Rr643437	regulatory region 643437	231 bp distal
Rr643438	regulatory region 643438	within coordinates
Rr643439	regulatory region 643439	65 bp proximal
Rr643440	regulatory region 643440	713 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	within coordinates
Tssr64959	transcription start site region 64959	187 bp downstream
Tssr64960	transcription start site region 64960	133 bp downstream
Tssr64961	transcription start site region 64961	42 bp downstream
Tssr64962	transcription start site region 64962	99 bp upstream
Tssr64963	transcription start site region 64963	117 bp upstream
Tssr64964	transcription start site region 64964	153 bp upstream
Tssr71075	transcription start site region 71075	within coordinates