rs52137616 SNP Detail

Summary

• ID
  rs52137616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172037921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGAGCCCA GGGAAGGGCA CAGATGGCAG AAAGGTACAA
  CAAGTAAGGA GCAAGTGGGG CTGGTACTCG GCTGCCACGG CCACTCGTCA TCTAGTCGTC
  R
  TCATCATCAT CGTCATCGTC ATCGTCGTCA TCGTCGTCGT CATCCTCTGT GTTGATCTCG
  CCCTCCAGCA CGTCCTCCAG CCAGTCCTCC AGCTCATCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss120010351	PARCsnp_1.07443	PARC_SEQ	INBRED	f	SNP			G	A
ss146183996	ENSMUSSNP4512211	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs52137616					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172037921 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	9 bp downstream
Tssr15168	transcription start site region 15168	228 bp upstream
Tssr15169	transcription start site region 15169	150 bp upstream
Tssr15170	transcription start site region 15170	128 bp upstream
Tssr15171	transcription start site region 15171	110 bp upstream
Tssr15172	transcription start site region 15172	29 bp upstream
Tssr15173	transcription start site region 15173	54 bp downstream
Tssr15174	transcription start site region 15174	106 bp downstream
Tssr15175	transcription start site region 15175	1629 bp downstream