rs52138145 SNP Detail

Summary

• ID
  rs52138145
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92244601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTGTTC ATTGTACATT
  CTTGGCTTCT TTGTCAAAGA TTATGTATCT ACAGGTGTGC AATGTTATTT CCAGATCTTC
  CATTCTACTC AATTGATCAA CCTGTCTGTC TCTGTACCAA TACCAGACTG TTTTTATCAC
  TATTGCTTTG CAGTATTGTT TGAGGTCAGG AATTGTGATT TTTCTCCAGA AGTTCTTTTA
  T
  TTTTAAGAAT TGTTTTCACT ATCCTGGGTT TTTTGTTTTT CTACATGAAA TTGAGAATTG
  CCCTTTCCAT GCCTGTGAAT AATTGTGCTG AAATTTTTGA TGGGGATAGC ATTGAATCTG
  TAGATTGTTT ATGGTAAGAT GATCAATTTT ATTATGCTAA TCCTACCAAT CCATGAACAT
  GGGAGATCTC TCCATTTTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135480999	ENSMUSSNP655367	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52138145					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92244601 () rs orientation: forward

Symbol	Name	Function Class
Rr580475	regulatory region 580475	636 bp distal
Sprr2d	small proline-rich protein 2D	1846 bp upstream
Tssr30282	transcription start site region 30282	1780 bp upstream
Tssr30283	transcription start site region 30283	1838 bp upstream