rs52138197 SNP Detail

Summary

• ID
  rs52138197
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50584576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GAGTGCCAGG ACAGTTAGGG CTACACAGAG AACCCCAATC
  TCAAAACAAA CAAATAAACA ACAACAACAA CAACATCAAA ACCCAACCAC AAACACAAAG
  M
  CTTTTTCCAC AAAAAAGTAC GCCCTTTAGC TTGGAACCAG AAACACTTTT AGCTTGACCT
  CTCTCCCACA GGAAGATGAA AACTACAAAA CTCTAAATCA T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133182566	ENSMUSSNP6647539	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52138197					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50584576 () rs orientation: forward

Symbol	Name	Function Class
Gm4782	predicted gene 4782	1041 bp upstream
Rr379340	regulatory region 379340	within coordinates
Tssr56424	transcription start site region 56424	824 bp upstream