rs52139186 SNP Detail

Summary

• ID
  rs52139186
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148782169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGCTTT CCTAGGCTCT
  TCTGCAATCA AGCCATCTCC TCTAGTTTCT TGCTTCCTCG GAAGGAACTA TTTCTGCCAC
  AATTCTTTTG AAAAGACATC CTCAGAGCAA TTAAGATATC ATTATGATTC TCATTCATAA
  ATTTAAACCT CTGGATGTGG GTAGCTACCA AAAATCCTCC GATAGGGCCC CTGGAGAGGA
  S
  CCGTTTTGAC AAGTCTCCTT GAAATCACTC CCTACCACTC AGGCCTCCCC CTCCTCTCTC
  TCCCTATACT CTCCTCCCCC CTCCTTCTCC TCTTCCTCCC CCTCCCCTTC TTCCTCTCCC
  TCCCCCTCCT CCTCCCCAAA CTCCTCCTCC TCCTCTTCCT CCTCCTCCTT CTCCTCTTCT
  TCCTCTTCCT CCTCCTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss61098101	NES16608724	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G		G	C		C
ss321017232	CHEV_3_148739497	CHEVERUD	SCREENING_POP	f	SNP									G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs52139186					SNP	C	C	C	C	C	C	C	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098101	NES16608724	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148782169 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	306 bp distal
Rr587253	regulatory region 587253	528 bp proximal
Tssr36091	transcription start site region 36091	556 bp downstream
Tssr36092	transcription start site region 36092	581 bp downstream
Tssr36093	transcription start site region 36093	618 bp downstream
Tssr36094	transcription start site region 36094	646 bp downstream
Tssr36095	transcription start site region 36095	703 bp downstream
Tssr36096	transcription start site region 36096	808 bp downstream