rs52139566 SNP Detail

Summary

• ID
  rs52139566
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44438926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTAGGCCATG ATAGTGTAAG ATTGTACCCA CTACACTATG
  TAGGTACTAC ATACGGGGCA CTATTTGTGT GTGTGTGTGA GAGAGAGAGA GAGAGAGAGA
  C
  AGAGAGAGAG AGAGAAAGAG AGAGAGAGAG GGAGAGAGAG AGAGAGAGTC AGTCAGAGAC
  AGACAGAGAC AGACAACGAT ATAGACACAC AGAGAGAGCC T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136396654	ENSMUSSNP3023199	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52139566					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44438926 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	1185 bp upstream
Rr200338	regulatory region 200338	474 bp proximal
Rr206318	regulatory region 206318	1725 bp distal
Rr401337	regulatory region 401337	838 bp downstream
Tssr89167	transcription start site region 89167	1657 bp upstream
Tssr89168	transcription start site region 89168	1206 bp upstream
Tssr89169	transcription start site region 89169	1189 bp upstream
Tssr89170	transcription start site region 89170	1128 bp upstream
Tssr89171	transcription start site region 89171	1114 bp upstream