rs52139902 SNP Detail

Summary

• ID
  rs52139902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16190160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAGGTGT CAGACAGAAG
  GGAATGTATC TAGTGAGACA CTAGAGGGTT TATATGTAGG GAAGAAGCTG GGAAAGGAGG
  ACTGTTTTAA CAGAGGACAC CTTAAAGATA CTTCTGCACA ATAAAAGACA GAGAATGAAA
  AGGTGGTGGG AAGAATTTAA AAAAAAAAAA AGAAAGAAAA AGAAAGAAAA GCCTCAGAAA
  R
  AAATTGTTTT AAAGTGCACA CTGGTCTTGT TCTGTGAATA CTGTAATCCT CAATGAACTC
  AGCTCTGCTG GTACTTTGAG GAGAAATGAC CCAGCCAGGC AGCCCTGCCG TGGATGCTAC
  ACTATGGTCA AGGCTGACAA GGGGAGGTGG GCAAGTAGAA GAACAAAATG AGAGTAGTTC
  ATGCCAGGGG AAAAGAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620150	NES15517504	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52139902					SNP	G	G	A	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620150	NES15517504	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16190160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	1749 bp proximal
Inhba	inhibin beta-A	within coordinates
Tssr118431	transcription start site region 118431	1167 bp downstream
Tssr118432	transcription start site region 118432	1136 bp downstream
Tssr118433	transcription start site region 118433	1123 bp downstream
Tssr118434	transcription start site region 118434	1102 bp downstream
Tssr118435	transcription start site region 118435	753 bp upstream
Tssr118436	transcription start site region 118436	1109 bp upstream
Tssr118437	transcription start site region 118437	1349 bp upstream
Tssr118438	transcription start site region 118438	1472 bp upstream
Tssr118439	transcription start site region 118439	1489 bp upstream
Tssr118440	transcription start site region 118440	1708 bp upstream
Tssr118441	transcription start site region 118441	1798 bp upstream