rs52140759 SNP Detail

Summary

• ID
  rs52140759
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126421070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGGAGAAACC TTGCTTTCAC TTCCCAGTTT CCAGTAAAAG
  AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG
  G
  AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGGAAGG AAGGAAGGAA GGAAGGAAGG
  AAGAGGAAGG AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145430016	ENSMUSSNP6265795	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52140759					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126421070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi687	CpG island 687	502 bp distal
Nckap5	NCK-associated protein 5	within coordinates
Rr417489	regulatory region 417489	602 bp distal
Rr417490	regulatory region 417490	916 bp distal
Rr417491	regulatory region 417491	98 bp distal
Tssr13401	transcription start site region 13401	609 bp upstream
Tssr13402	transcription start site region 13402	529 bp upstream
Tssr13403	transcription start site region 13403	485 bp upstream
Tssr13404	transcription start site region 13404	459 bp upstream
Tssr13405	transcription start site region 13405	382 bp upstream