rs52141286 SNP Detail

Summary

• ID
  rs52141286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121267574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTTTTTT TTTTCTTTTT
  CTTTTTTTGG TTTTGGTTTT GGTTTTTCAA GACAGGGTTT CTCTGAGTAG CCTGGCCATC
  CTGAAATTCA CTCTGTAGAC CAACCAGGCT GGCCTGGAAC TCAGAAATCC GCCTGCCTCT
  GCCTCCCAAG TGCTGGGATT AAAGGCATGC GCCACCACAC CCGGCTATCC CTCCTCCTTT
  Y
  TTTTTTTTAT TTTTGTTTTG TTTTGGTTTG GTTTGGTTTG GTTTTTTGAG ACAGGGTTTC
  TCTGTGTATC CCTGGCTGTC CTGGAACTCA CTTTGTAGAC CAGTCTGGCC TCGAACTCAG
  AAATCCACCT GCCTCTGCCT CCCGAGTGCT GGGATTAAAG GCGTGCGCCA CCACACCCAG
  CCCTCCTCCT TACTTGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	PWK/PhJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss355466555	MGP_WTSI_2_121262829	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	PWK/PhJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs52141286					SNP	C	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355466555	MGP_WTSI_2_121262829	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121267574 () rs orientation: forward

Symbol	Name	Function Class
Ell3	elongation factor RNA polymerase II-like 3	1934 bp downstream
Pdia3	protein disulfide isomerase associated 3	within coordinates
Rr563821	regulatory region 563821	1952 bp distal
Tssr19767	transcription start site region 19767	1171 bp downstream
Tssr19768	transcription start site region 19768	729 bp downstream
Tssr19769	transcription start site region 19769	514 bp upstream
Tssr19770	transcription start site region 19770	812 bp upstream