rs52141314 SNP Detail

Summary

• ID
  rs52141314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163628572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGG TGAGGGAACA AGGCAAAAAC
  R
  CAAACACAAA TAATTAAGAT GCAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148212607	ENSMUSSNP99214	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320604016	CHEV_2_163612388	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52141314					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163628572 () rs orientation: forward

Symbol	Name	Function Class
Gm75515	predicted gene, 75515	within coordinates
Rr569489	regulatory region 569489	1021 bp proximal
Rr569490	regulatory region 569490	1918 bp proximal