rs52141591 SNP Detail

Summary

• ID
  rs52141591
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27776498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCTCG GCTTCCCGAC
  TGCTGGGTTT GAAAGTGTGT GCACCACACC TGGGAAGCAC TAGTTTCAAC CCACAGAAGC
  ACACACATCC CCTCTAAAAA TCAAATTCCC ACACCATTGG TGTGTGCTTC CACTACAACC
  GCATTAAGAT GGAGATTTTC TTTTTTTTTT ATTTACTTTT TTATTATTGG GTATTTATTT
  M
  ATTTACATTT CCAACGCTAT CCCAAAAGTC CCCCACACCC TCCCACACCC ACTCCCCCAC
  CCACCCACTC CCACCTCTTG GCCCTGGCGT TCCCCTGTAC TGAGACATAT AAAGTCTGCA
  CGACCAATGG GCCTCTCTTT CCAGTGATGG CCGACCAGGC CATCTTCTGA TACATATGCA
  GCTAGAGACA CGAGTTCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148630986	ENSMUSSNP5695707	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52141591					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27776498 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Tssr65346	transcription start site region 65346	1885 bp downstream
Tssr65347	transcription start site region 65347	1858 bp downstream
Tssr65348	transcription start site region 65348	1831 bp downstream
Tssr65349	transcription start site region 65349	1771 bp downstream
Tssr65350	transcription start site region 65350	1745 bp downstream
Tssr65351	transcription start site region 65351	1723 bp downstream