rs52141654 SNP Detail

Summary

• ID
  rs52141654
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:91907252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTA TTTCATGAGC TTTTAAAAAC
  T
  GAGTCAAGGC GAAATACTGT GTTAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147299126	ENSMUSSNP38630	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323389576	CHEV_10_91534135	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52141654					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:91907252 () rs orientation: forward

Symbol	Name	Function Class
D10Mit176	DNA segment, Chr 10, Massachusetts Institute of Technology 176	1842 bp distal
Gm55043	predicted gene, 55043	271 bp downstream
Mir135a-2	microRNA 135a-2	696 bp downstream
Tssr98922	transcription start site region 98922	708 bp downstream
Tssr98923	transcription start site region 98923	2000 bp downstream