rs52141731 SNP Detail

Summary

• ID
  rs52141731
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7503927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCATGGC CAGCCTCAGG
  CTAAGTGAAA TCCTATCTCA AATATACAGC CGGGCAATGG TGGCCCACGC CTTTAGTCCC
  AGCACTTGGG AGGCAGAGGC AGGCGGATTT CTGAGTTCGA GGCCAGCCTG GGCTACCAAG
  TAAGTTCCAG GACAGCCAGG GATACACAGA AAAAAACCGG CCTCAAAAAA AAAAAAGAAA
  G
  AAACAAACAA ACAAACAAAT AAATGGTATC CAGTCAAATG TTTCCAAATT CAAGCAACAG
  AAGGGTATAA AATGGTGATT TTAATCTCAA CTATATTTTT TCCCTTGCAT TTTGTAACAT
  GGCAATCATC ACTGAGGGTG CTGGGCCTAG TTTTAGTATC ATGAAAGAAG GTAAGTAGTC
  TGTTAAGAGA CAGCAGAACC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134083446	ENSMUSSNP1449764	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52141731					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7503927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22570	CpG island 22570	840 bp proximal
Rr689617	regulatory region 689617	461 bp proximal
Rr689618	regulatory region 689618	794 bp proximal
Syp	synaptophysin	892 bp upstream
Tssr160397	transcription start site region 160397	986 bp upstream