rs52144494 SNP Detail

Summary

• ID
  rs52144494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17814887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCTGGGG CAGAGGGGAC
  GGGGTGACGG GCTCTGGGCC GGCGGGGCGT TGAGCGATCG CTCCCCGGCT TGCACGGGAG
  GCGGCGGAGT GGGACTGGAG CCTCCGCCGC GGGCTCTCCC GGCTTTGCTC TTGGACTCTT
  CGTTTGCCTC TTGCTCCTCT CCGGCCCTGG AGCTCCGTGG AAACGACCGG CCGGAGCGCA
  R
  GCAGCGGCCG GGCGCCCCCT CTGCTGAACC CGGCTCCAAG CGCTCGCTCG CTCGCTCGCC
  CTCTCGCTGC GCTCCCTCCG GCTCCGAGCA GCGCGCCGGG ACTGTGAGTG GCGACGGCAG
  CGGCGCCCGC TCCGCATAAA TGACTCCCCC GCCCCCCGGA GCACCCCTCC TTTCCCACAT
  CTCCCTCCTC CTCTACTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146130691	ENSMUSSNP4563282	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52144494					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17814887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	1253 bp distal
Cpgi10666	CpG island 10666	within coordinates
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	53 bp proximal
Rr544887	regulatory region 544887	99 bp proximal
Tssr158513	transcription start site region 158513	97 bp downstream