rs52145181 SNP Detail

Summary

• ID
  rs52145181
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88117293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATGAG CACTGCCTCT
  TTAAATTTAG AGACAAGCTT CATTCTGCCT TGGAAAGATG CAACTGAAAG ACAGGAGACA
  CTCCCTCTCC TTTCTTTTGT CTTGGAATTA GCTCAAAAAA AATCTCTTAG ATGAGACCCA
  CCCCAGCTCC CACATCCCAC CCCACTCTCC ACCCCACCCA CTCTGGCTGC CCAATAATAA
  M
  GATCAAGAGG CCTCTGTTGC TTCCTCAGAC TCACACTTTC CATGTCTAGA TTTCATTTTC
  GTGAGTTGAT GAAAAGCTAA AGCCAGAAAG CAGCTGGGAG GACAAGAAAG AGGCCTTATA
  AGGTAACTAC TGAGTAAATC AAACTTTTAG ATGGATTCTT TCTTCAAACC TCACCTTTTC
  CAGTTACCCT TTGTATCGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194216	NES16700750	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52145181					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194216	NES16700750	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88117293 () rs orientation: forward

Symbol	Name	Function Class
1700066N21Rik	RIKEN cDNA 1700066N21 gene	within coordinates
2310003L06Rik	RIKEN cDNA 2310003L06 gene	25 bp upstream
Gm28434	predicted gene 28434	83 bp upstream
Rr378253	regulatory region 378253	within coordinates
Tssr46962	transcription start site region 46962	21 bp upstream